wise2-2.4.1-7.mga6.i586.rpm


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Description

wise2 - Comparisons of DNA and protein sequences

Distribution: Mageia Cauldron
Repository: Mageia Core i586
Package name: wise2
Package version: 2.4.1
Package release: 7.mga6
Package architecture: i586
Package type: rpm
Installed size: 9.98 MB
Download size: 1.15 MB
Official Mirror: distrib-coffee.ipsl.jussieu.fr
Wise2 is a package focused on comparisons of biopolymers, commonly DNA and protein sequence. Wise2's particular forte is the comparison of DNA sequence at the level of its protein translation. This comparison allows the simulta- neous prediction of say gene structure with homology based alignment. The Wise2 package was principally written by Ewan Birney, who wrote the main genewise and estwise programs. The protein comparison database search program was written by Richard Copley using the underlying Wise2 libraries. Wise2 also uses code from Sean Eddy for reading HMMs and for Extreme value distribution fitting.

Alternatives

Provides

  • config(wise2) == 2.4.1-7.mga6
  • wise2 == 2.4.1-7.mga6
  • wise2(x86-32) == 2.4.1-7.mga6

Obsoletes

  • wise == 2.4.1-3.mga5

    Download

    Install Howto

    1. Enable Mageia Core repository on "Install and Remove Software"
    2. Update packages list:
      # urpmi.update -a
    3. Install wise2 rpm package:
      # urpmi wise2

    Files

    • /etc/profile.d/wise.csh
    • /etc/profile.d/wise.sh
    • /usr/bin/dba
    • /usr/bin/dnal
    • /usr/bin/estwise
    • /usr/bin/estwisedb
    • /usr/bin/genewise
    • /usr/bin/genewisedb
    • /usr/bin/genomewise
    • /usr/bin/psw
    • /usr/bin/pswdb
    • /usr/share/doc/wise2/LICENSE
    • /usr/share/doc/wise2/README
    • /usr/share/doc/wise2/docs/README
    • /usr/share/doc/wise2/docs/apiend.tex
    • /usr/share/doc/wise2/docs/appendix.tex
    • /usr/share/doc/wise2/docs/dynamite.tex
    • /usr/share/doc/wise2/docs/genewise21.eps
    • /usr/share/doc/wise2/docs/genewise6.eps
    • /usr/share/doc/wise2/docs/gettex.pl
    • /usr/share/doc/wise2/docs/makefile
    • /usr/share/doc/wise2/docs/wise2.tex
    • /usr/share/doc/wise2/docs/wise2api.tex
    • /usr/share/doc/wise2/docs/wise3arch.tex
    • /usr/share/doc/wise2/docs/papers/alignment.bib
    • /usr/share/doc/wise2/docs/papers/promoterwise.tex
    • /usr/share/wise/BLOSUM30.bla
    • /usr/share/wise/BLOSUM45.bla
    • /usr/share/wise/BLOSUM62.bla
    • /usr/share/wise/BLOSUM80.bla
    • /usr/share/wise/aa.rnd
    • /usr/share/wise/cb.tmf
    • /usr/share/wise/codon.martian
    • /usr/share/wise/codon.table
    • /usr/share/wise/gene.stat
    • /usr/share/wise/gon120.bla
    • /usr/share/wise/gon160.bla
    • /usr/share/wise/gon200.bla
    • /usr/share/wise/gon250.bla
    • /usr/share/wise/gon350.bla
    • /usr/share/wise/human.gf
    • /usr/share/wise/human.gp
    • /usr/share/wise/human.stats
    • /usr/share/wise/idenity.bla
    • /usr/share/wise/methods
    • /usr/share/wise/pb.gf
    • /usr/share/wise/pombe.gf
    • /usr/share/wise/tm.pri
    • /usr/share/wise/wag55
    • /usr/share/wise/wag65
    • /usr/share/wise/wag75
    • /usr/share/wise/wag85
    • /usr/share/wise/wise.2
    • /usr/share/wise/wise.per
    • /usr/share/wise/worm.gf

    Changelog

    2016-03-06 - pterjan <pterjan> 2.4.1-7.mga6 + Revision: 986869 - Obsolete duplicate package wise

    2016-02-01 - umeabot <umeabot> 2.4.1-6.mga6 + Revision: 930870 - Mageia 6 Mass Rebuild

    2014-10-15 - umeabot <umeabot> 2.4.1-5.mga5 + Revision: 740568 - Second Mageia 5 Mass Rebuild

    2014-09-16 - umeabot <umeabot> 2.4.1-4.mga5 + Revision: 690323 - Mageia 5 Mass Rebuild + ovitters <ovitters> - rename spec file to match package name

    2014-06-08 - dmorgan <dmorgan> 2.4.1-3.mga5 + Revision: 634735 - Rename to be coherent with the software name

    2013-10-18 - umeabot <umeabot> 2.4.1-3.mga4 + Revision: 520200 - Mageia 4 Mass Rebuild

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