wise2-2.4.1-7.mga6.i586.rpm


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Description

wise2 - Comparisons of DNA and protein sequences

Property Value
Distribution Mageia Cauldron
Repository Mageia Core i586
Package name wise2
Package version 2.4.1
Package release 7.mga6
Package architecture i586
Package type rpm
Installed size 9.98 MB
Download size 1.15 MB
Official Mirror distrib-coffee.ipsl.jussieu.fr
Wise2 is a package focused on comparisons of biopolymers, commonly DNA and
protein sequence. Wise2's particular forte is the comparison of DNA sequence
at the level of its protein translation. This comparison allows the simulta-
neous prediction of say gene structure with homology based alignment.
The Wise2 package was principally written by Ewan Birney, who wrote the main
genewise and estwise programs. The protein comparison database search program
was written by Richard Copley using the underlying Wise2 libraries.
Wise2 also uses code from Sean Eddy for reading HMMs and
for Extreme value distribution fitting.

Alternatives

Package Version Architecture Repository
wise2-2.4.1-7.mga6.x86_64.rpm 2.4.1 x86_64 Mageia Core
wise2 - - -

Requires

Name Value
config(wise2) == 2.4.1-7.mga6
libc.so.6 -
libc.so.6(GLIBC_2.0) -
libc.so.6(GLIBC_2.1) -
libc.so.6(GLIBC_2.3) -
libc.so.6(GLIBC_2.3.4) -
libc.so.6(GLIBC_2.4) -
libc.so.6(GLIBC_2.7) -
libglib-2.0.so.0 -
libm.so.6 -
libm.so.6(GLIBC_2.0) -
libpthread.so.0 -
libpthread.so.0(GLIBC_2.0) -
libpthread.so.0(GLIBC_2.1) -

Provides

Name Value
config(wise2) == 2.4.1-7.mga6
wise2 == 2.4.1-7.mga6
wise2(x86-32) == 2.4.1-7.mga6

Obsoletes

Name Value
wise == 2.4.1-3.mga5

Download

Type URL
Binary Package wise2-2.4.1-7.mga6.i586.rpm
Source Package wise2-2.4.1-7.mga6.src.rpm

Install Howto

  1. Enable Mageia Core repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install wise2 rpm package:
    # urpmi wise2

Files

Path
/etc/profile.d/wise.csh
/etc/profile.d/wise.sh
/usr/bin/dba
/usr/bin/dnal
/usr/bin/estwise
/usr/bin/estwisedb
/usr/bin/genewise
/usr/bin/genewisedb
/usr/bin/genomewise
/usr/bin/psw
/usr/bin/pswdb
/usr/share/doc/wise2/LICENSE
/usr/share/doc/wise2/README
/usr/share/doc/wise2/docs/README
/usr/share/doc/wise2/docs/apiend.tex
/usr/share/doc/wise2/docs/appendix.tex
/usr/share/doc/wise2/docs/dynamite.tex
/usr/share/doc/wise2/docs/genewise21.eps
/usr/share/doc/wise2/docs/genewise6.eps
/usr/share/doc/wise2/docs/gettex.pl
/usr/share/doc/wise2/docs/makefile
/usr/share/doc/wise2/docs/wise2.tex
/usr/share/doc/wise2/docs/wise2api.tex
/usr/share/doc/wise2/docs/wise3arch.tex
/usr/share/doc/wise2/docs/papers/alignment.bib
/usr/share/doc/wise2/docs/papers/promoterwise.tex
/usr/share/wise/BLOSUM30.bla
/usr/share/wise/BLOSUM45.bla
/usr/share/wise/BLOSUM62.bla
/usr/share/wise/BLOSUM80.bla
/usr/share/wise/aa.rnd
/usr/share/wise/cb.tmf
/usr/share/wise/codon.martian
/usr/share/wise/codon.table
/usr/share/wise/gene.stat
/usr/share/wise/gon120.bla
/usr/share/wise/gon160.bla
/usr/share/wise/gon200.bla
/usr/share/wise/gon250.bla
/usr/share/wise/gon350.bla
/usr/share/wise/human.gf
/usr/share/wise/human.gp
/usr/share/wise/human.stats
/usr/share/wise/idenity.bla
/usr/share/wise/methods
/usr/share/wise/pb.gf
/usr/share/wise/pombe.gf
/usr/share/wise/tm.pri
/usr/share/wise/wag55
/usr/share/wise/wag65
/usr/share/wise/wag75
/usr/share/wise/wag85
/usr/share/wise/wise.2
/usr/share/wise/wise.per
/usr/share/wise/worm.gf

Changelog

2016-03-06 - pterjan <pterjan> 2.4.1-7.mga6
+ Revision: 986869
- Obsolete duplicate package wise
2016-02-01 - umeabot <umeabot> 2.4.1-6.mga6
+ Revision: 930870
- Mageia 6 Mass Rebuild
2014-10-15 - umeabot <umeabot> 2.4.1-5.mga5
+ Revision: 740568
- Second Mageia 5 Mass Rebuild
2014-09-16 - umeabot <umeabot> 2.4.1-4.mga5
+ Revision: 690323
- Mageia 5 Mass Rebuild
+ ovitters <ovitters>
- rename spec file to match package name
2014-06-08 - dmorgan <dmorgan> 2.4.1-3.mga5
+ Revision: 634735
- Rename to be coherent with the software name
2013-10-18 - umeabot <umeabot> 2.4.1-3.mga4
+ Revision: 520200
- Mageia 4 Mass Rebuild

See Also

Package Description
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wizznic-1.0-0.20160216.4.mga7.i586.rpm Brick-matching puzzle game
wizznic-data-1.0-0.20160216.4.mga7.noarch.rpm Arch-independent data files for the Wizznic game
wkhtmltopdf-0.12.4-1.mga7.i586.rpm Simple shell utility to convert html to pdf
wmakerconf-2.12-17.mga6.i586.rpm WMakerConf is a configuration utility for WindowMaker
wmbattery-2.51-2.mga7.i586.rpm Displays the status of your laptop's battery in a small icon
wmbutton-0.7.1-1.mga7.i586.rpm A very configurable dockapp for launching any program
wmcalc-0.6-3.mga7.i586.rpm A dock application that is a simple four function calculator
wmcalclock-1.25-8.mga6.i586.rpm A dock application giving the current date and time
wmcoincoin-2.6.3-1.mga6.i586.rpm Yet another funny dockapp for reading news feed
wmcpufreq-3.1-3.mga6.i586.rpm Yet another dockapp for monitoring CPU frequency
wmcpuload-1.1.1-1.mga6.i586.rpm Another dock application to monitor CPU usage
wmctrl-1.07-12.mga6.i586.rpm Command line tool to interact with an EWMH/NetWM compatible X Window Manager
wmcube-1.0.2-1.mga6.i586.rpm Another dock monitor displaying CPU load as a spinning cube
wmdiskmon-0.0.2-8.mga7.i586.rpm A dock application to monitor disks usage
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